Binary compatibility report for the CDK library between 1.0.3 and 1.0.4 versions

Test Info


Library NameCDK
Version #11.0.3
Version #21.0.4

Test Results


Total Java ARchives1
Total Methods / Classes32683 / 3385
VerdictIncompatible
(0.1%)

Problem Summary


SeverityCount
Added Methods-15
Removed MethodsHigh46
Problems with
Data Types
High3
Medium0
Low0
Problems with
Methods
High0
Medium0
Low3
Other Changes
in Data Types
-4

Added Methods (15)


cdk-1.0.4.jar, AtomEditor.class
package org.openscience.cdk.applications.swing.editor
AtomEditor.AtomEditor ( IChemModel chemModel, UndoableEditSupport undoSupport )

cdk-1.0.4.jar, ChemFileManipulator.class
package org.openscience.cdk.tools.manipulator
ChemFileManipulator.getAllReactions ( IChemFile file ) [static]  :  List

cdk-1.0.4.jar, ChemObjectEditor.class
package org.openscience.cdk.applications.swing.editor
ChemObjectEditor.getMayclose ( )  :  boolean

cdk-1.0.4.jar, ConvertToAtomEdit.class
package org.openscience.cdk.applications.undoredo
ConvertToAtomEdit.canRedo ( )  :  boolean
ConvertToAtomEdit.canUndo ( )  :  boolean
ConvertToAtomEdit.ConvertToAtomEdit ( IAtomContainer relevantContainer, IPseudoAtom pseudo, IAtom atom )
ConvertToAtomEdit.getPresentationName ( )  :  String
ConvertToAtomEdit.redo ( )  :  void
ConvertToAtomEdit.undo ( )  :  void

cdk-1.0.4.jar, GeometryTools.class
package org.openscience.cdk.geometry
GeometryTools.center ( IReaction reaction, Dimension areaDim, HashMap renderingCoordinates ) [static]  :  void
GeometryTools.translate2D ( IReaction reaction, double transX, double transY, HashMap renderingCoordinates ) [static]  :  void
GeometryTools.translate2D ( IReaction reaction, Vector2d vector, HashMap renderingCoordinates ) [static]  :  void
GeometryTools.translateAllPositive ( IReaction reaction, HashMap renderingCoordinates ) [static]  :  void

cdk-1.0.4.jar, IDCreator.class
package org.openscience.cdk.tools
IDCreator.setIDPolicy ( int policy ) [static]  :  void

cdk-1.0.4.jar, MDLRXNWriter.class
package org.openscience.cdk.io
MDLRXNWriter.setRdFields ( Map map )  :  void

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Removed Methods (46)


cdk-1.0.3.jar, AtomEditor.class
package org.openscience.cdk.applications.swing.editor
AtomEditor.AtomEditor ( )

cdk-1.0.3.jar, EquivalentClassesDeterministicGenerator.class
package org.openscience.cdk.structgen.deterministic
EquivalentClassesDeterministicGenerator.EquivalentClassesDeterministicGenerator ( )
EquivalentClassesDeterministicGenerator.setAtomContainer ( IAtomContainer ac )  :  void

cdk-1.0.3.jar, GENMDeterministicGenerator.class
package org.openscience.cdk.structgen.deterministic
GENMDeterministicGenerator.addListener ( IStructureGenerationListener x )  :  void
GENMDeterministicGenerator.analyseMolecularFormula ( MFAnalyser mfa )  :  void
GENMDeterministicGenerator.checkAdmissibility ( int step, List setOfBasicFragment, int[ ][ ] adjacencyMatrix )  :  boolean
GENMDeterministicGenerator.checkConstraint ( int step, List setOfBasicFragment, int[ ][ ] adjacencyMatrix, IAtomContainer ac )  :  boolean
GENMDeterministicGenerator.convertToMol ( List set, int[ ][ ] matrix, List structures )  :  void
GENMDeterministicGenerator.DFSM ( int[ ][ ] adjacency, int number, boolean[ ] isVisited )  :  void
GENMDeterministicGenerator.fireChange ( )  :  void
GENMDeterministicGenerator.forceFilling ( int step, List setOfBasicFragment, int[ ][ ] adjacencyMatrix, int[ ][ ] previousMatrix )  :  int
GENMDeterministicGenerator.generate ( )  :  void
GENMDeterministicGenerator.generateBasicFragments ( )  :  void
GENMDeterministicGenerator.generateBasicUnits ( )  :  void
GENMDeterministicGenerator.generateIsomers ( )  :  void
GENMDeterministicGenerator.GENMDeterministicGenerator ( String mf, String path )
GENMDeterministicGenerator.getAtomContainer ( )  :  IAtomContainer
GENMDeterministicGenerator.getBasicUnit ( List basicUnits )  :  void
GENMDeterministicGenerator.getEquivalentClass ( List setOfBasicFragment, int[ ] setOfStability )  :  int
GENMDeterministicGenerator.getFinalStructure ( List setOfBasicFragment, int[ ][ ] adjacencyMatrix, GENMDeterministicGenerator.IntArray storedSymbolOfStructure, int[ ] totalNumberOfThisSet, int totalNumberOfAtomAndBond )  :  void
GENMDeterministicGenerator.getMaximumWCF ( List setOfBasicFragment, int step, int[ ] rowMatrix, int[ ][ ] adjacency, int[ ][ ] previousMatrix, int[ ] parentID )  :  boolean
GENMDeterministicGenerator.getNextWCF ( List setOfBasicFragment, int step, int[ ] rowMatrix, int[ ][ ] adjacencyMatrix, int[ ][ ] previousMatrix, int[ ] parentID )  :  boolean
GENMDeterministicGenerator.getNumberOfStructures ( )  :  int
GENMDeterministicGenerator.getOrderOfBasicFragmentSet ( List setOfBasicFragment, int[ ] parentID )  :  List
GENMDeterministicGenerator.getReturnedStructureCount ( )  :  long
GENMDeterministicGenerator.getSetOfStability ( List setOfBasicFragment, int step, int[ ] rowMatrix, int[ ][ ] adjacency, int[ ] setOfStability, int[ ] parentID )  :  void
GENMDeterministicGenerator.getStructures ( )  :  List
GENMDeterministicGenerator.getStructuresAtATime ( )  :  int
GENMDeterministicGenerator.getSymmetryFromAllPath ( int size, int[ ][ ] connectivity, int[ ] classID )  :  int
GENMDeterministicGenerator.getSymmetryFromNeighbour ( int size, int number, int[ ][ ] connectivity, int[ ] classID )  :  int
GENMDeterministicGenerator.hasMoreStructures ( )  :  boolean
GENMDeterministicGenerator.initializeMatrix ( List setOfBasicFragment, int[ ] bondAttribute, int[ ][ ] adjacency, int[ ][ ] previousMatrix )  :  void
GENMDeterministicGenerator.initializeParameters ( )  :  void
GENMDeterministicGenerator.isForceFilling ( int step, int[ ][ ] previousMatrix, int[ ][ ] adjacency )  :  boolean
GENMDeterministicGenerator.normalization ( List setOfBasicFragment, int[ ][ ] adjacencyMatrix )  :  int[ ][ ]
GENMDeterministicGenerator.removeChangeListener ( IStructureGenerationListener x )  :  void
GENMDeterministicGenerator.restoreMatrix ( int step, int[ ] freeValence, int[ ][ ] sourceMatrix, int[ ][ ] destMatrix )  :  void
GENMDeterministicGenerator.setAtomContainer ( IAtomContainer atomContainer )  :  void
GENMDeterministicGenerator.setBasicUnits ( List basicUnits )  :  void
GENMDeterministicGenerator.setReturnedStructureCount ( long returnedStructureCount )  :  void
GENMDeterministicGenerator.setStructuresAtATime ( int structuresAtATime )  :  void
GENMDeterministicGenerator.testBasicFragment ( )  :  boolean
GENMDeterministicGenerator.writeToFile ( List setOfBasicFragment, int number, int[ ][ ] adjacency )  :  void

cdk-1.0.3.jar, Graph.class
package org.openscience.cdk.structgen.deterministic
Graph.getNumberOfClasses ( )  :  int
Graph.Graph ( )
Graph.partition ( )  :  void

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Problems with Data Types, High Severity (3)


cdk-1.0.3.jar
package org.openscience.cdk.structgen.deterministic
[+] EquivalentClassesDeterministicGenerator (1)
[+] GENMDeterministicGenerator (1)
[+] Graph (1)

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Problems with Methods, Low Severity (3)


cdk-1.0.3.jar, MDLRXNWriter
package org.openscience.cdk.io
[+] MDLRXNWriter.MDLRXNWriter ( ) (1)
[+] MDLRXNWriter.MDLRXNWriter ( OutputStream output ) (1)
[+] MDLRXNWriter.MDLRXNWriter ( Writer out ) (1)

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Other Changes in Data Types (4)


cdk-1.0.3.jar
package org.openscience.cdk.applications.swing.editor
[+] ChemObjectEditor (1)

package org.openscience.cdk.io
[+] MDLRXNWriter (1)

package org.openscience.cdk.tools
[+] IDCreator (2)

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Java ARchives (1)


cdk-1.0.3.jar

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