Binary compatibility report for the CDK library between 1.0 and 1.0.1 versions

Test Info

Library Name	CDK
Version #1	1.0
Version #2	1.0.1

Test Results

Total Java ARchives	1
Total Methods / Classes	42808 / 4169
Verdict	Incompatible (0.04%)

Problem Summary

	Severity	Count
Added Methods	-	496
Removed Methods	High	19
Problems with Data Types	High	2
	Medium	0
	Low	3
Problems with Methods	High	0
	Medium	0
	Low	0
Other Changes in Data Types	-	3

Added Methods (496)

cdk-1.0.1.jar, AliphaticSymbolAtom.class
package org.openscience.cdk.isomorphism.matchers.smarts
AliphaticSymbolAtom.AliphaticSymbolAtom ( )
AliphaticSymbolAtom.matches ( IAtom atom ) :  boolean

cdk-1.0.1.jar, AromaticSymbolAtom.class
package org.openscience.cdk.isomorphism.matchers.smarts
AromaticSymbolAtom.AromaticSymbolAtom ( )
AromaticSymbolAtom.matches ( IAtom atom ) :  boolean

cdk-1.0.1.jar, ASTAliphatic.class
package org.openscience.cdk.smiles.smarts.parser
ASTAliphatic.ASTAliphatic ( int id )
ASTAliphatic.ASTAliphatic ( SMARTSParser p, int id )
ASTAliphatic.jjtAccept ( SMARTSParserVisitor visitor, Object data ) :  Object

cdk-1.0.1.jar, ASTAnyAtom.class
package org.openscience.cdk.smiles.smarts.parser
ASTAnyAtom.ASTAnyAtom ( int id )
ASTAnyAtom.ASTAnyAtom ( SMARTSParser p, int id )
ASTAnyAtom.jjtAccept ( SMARTSParserVisitor visitor, Object data ) :  Object

cdk-1.0.1.jar, ASTAromatic.class
package org.openscience.cdk.smiles.smarts.parser
ASTAromatic.ASTAromatic ( int id )
ASTAromatic.ASTAromatic ( SMARTSParser p, int id )
ASTAromatic.jjtAccept ( SMARTSParserVisitor visitor, Object data ) :  Object

cdk-1.0.1.jar, ASTAtom.class
package org.openscience.cdk.smiles.smarts.parser
ASTAtom.ASTAtom ( int id )
ASTAtom.ASTAtom ( SMARTSParser p, int id )
ASTAtom.jjtAccept ( SMARTSParserVisitor visitor, Object data ) :  Object

cdk-1.0.1.jar, ASTAtomicMass.class
package org.openscience.cdk.smiles.smarts.parser
ASTAtomicMass.ASTAtomicMass ( int id )
ASTAtomicMass.ASTAtomicMass ( SMARTSParser p, int id )
ASTAtomicMass.getMass ( ) :  int
ASTAtomicMass.jjtAccept ( SMARTSParserVisitor visitor, Object data ) :  Object
ASTAtomicMass.setMass ( int mass ) :  void

cdk-1.0.1.jar, ASTAtomicNumber.class
package org.openscience.cdk.smiles.smarts.parser
ASTAtomicNumber.ASTAtomicNumber ( int id )
ASTAtomicNumber.ASTAtomicNumber ( SMARTSParser p, int id )
ASTAtomicNumber.getNumber ( ) :  int
ASTAtomicNumber.jjtAccept ( SMARTSParserVisitor visitor, Object data ) :  Object
ASTAtomicNumber.setNumber ( int number ) :  void

cdk-1.0.1.jar, ASTCharge.class
package org.openscience.cdk.smiles.smarts.parser
ASTCharge.ASTCharge ( int id )
ASTCharge.ASTCharge ( SMARTSParser p, int id )
ASTCharge.getCharge ( ) :  int
ASTCharge.isPositive ( ) :  boolean
ASTCharge.jjtAccept ( SMARTSParserVisitor visitor, Object data ) :  Object
ASTCharge.setCharge ( int charge ) :  void
ASTCharge.setPositive ( boolean isPositive ) :  void

cdk-1.0.1.jar, ASTChirality.class
package org.openscience.cdk.smiles.smarts.parser
ASTChirality.ASTChirality ( int id )
ASTChirality.ASTChirality ( SMARTSParser p, int id )
ASTChirality.jjtAccept ( SMARTSParserVisitor visitor, Object data ) :  Object

cdk-1.0.1.jar, ASTElement.class
package org.openscience.cdk.smiles.smarts.parser
ASTElement.ASTElement ( int id )
ASTElement.ASTElement ( SMARTSParser p, int id )
ASTElement.getSymbol ( ) :  String
ASTElement.jjtAccept ( SMARTSParserVisitor visitor, Object data ) :  Object
ASTElement.setSymbol ( String symbol ) :  void

cdk-1.0.1.jar, ASTExplicitAtom.class
package org.openscience.cdk.smiles.smarts.parser
ASTExplicitAtom.ASTExplicitAtom ( int id )
ASTExplicitAtom.ASTExplicitAtom ( SMARTSParser p, int id )
ASTExplicitAtom.getSymbol ( ) :  String
ASTExplicitAtom.jjtAccept ( SMARTSParserVisitor visitor, Object data ) :  Object
ASTExplicitAtom.setSymbol ( String symbol ) :  void

cdk-1.0.1.jar, ASTExplicitConnectivity.class
package org.openscience.cdk.smiles.smarts.parser
ASTExplicitConnectivity.ASTExplicitConnectivity ( int id )
ASTExplicitConnectivity.ASTExplicitConnectivity ( SMARTSParser p, int id )
ASTExplicitConnectivity.getNumOfConnection ( ) :  int
ASTExplicitConnectivity.jjtAccept ( SMARTSParserVisitor visitor, Object data ) :  Object
ASTExplicitConnectivity.setNumOfConnection ( int degree ) :  void

cdk-1.0.1.jar, ASTExplicitHighAndBond.class
package org.openscience.cdk.smiles.smarts.parser
ASTExplicitHighAndBond.ASTExplicitHighAndBond ( int id )
ASTExplicitHighAndBond.ASTExplicitHighAndBond ( SMARTSParser p, int id )
ASTExplicitHighAndBond.jjtAccept ( SMARTSParserVisitor visitor, Object data ) :  Object

cdk-1.0.1.jar, ASTExplicitHighAndExpression.class
package org.openscience.cdk.smiles.smarts.parser
ASTExplicitHighAndExpression.ASTExplicitHighAndExpression ( int id )
ASTExplicitHighAndExpression.ASTExplicitHighAndExpression ( SMARTSParser p, int id )
ASTExplicitHighAndExpression.jjtAccept ( SMARTSParserVisitor visitor, Object data ) :  Object

cdk-1.0.1.jar, ASTGroup.class
package org.openscience.cdk.smiles.smarts.parser
ASTGroup.ASTGroup ( int id )
ASTGroup.ASTGroup ( SMARTSParser p, int id )
ASTGroup.jjtAccept ( SMARTSParserVisitor visitor, Object data ) :  Object

cdk-1.0.1.jar, ASTImplicitHCount.class
package org.openscience.cdk.smiles.smarts.parser
ASTImplicitHCount.ASTImplicitHCount ( int id )
ASTImplicitHCount.ASTImplicitHCount ( SMARTSParser p, int id )
ASTImplicitHCount.getCount ( ) :  int
ASTImplicitHCount.jjtAccept ( SMARTSParserVisitor visitor, Object data ) :  Object
ASTImplicitHCount.setCount ( int count ) :  void

cdk-1.0.1.jar, ASTImplicitHighAndBond.class
package org.openscience.cdk.smiles.smarts.parser
ASTImplicitHighAndBond.ASTImplicitHighAndBond ( int id )
ASTImplicitHighAndBond.ASTImplicitHighAndBond ( SMARTSParser p, int id )
ASTImplicitHighAndBond.jjtAccept ( SMARTSParserVisitor visitor, Object data ) :  Object

cdk-1.0.1.jar, ASTImplicitHighAndExpression.class
package org.openscience.cdk.smiles.smarts.parser
ASTImplicitHighAndExpression.ASTImplicitHighAndExpression ( int id )
ASTImplicitHighAndExpression.ASTImplicitHighAndExpression ( SMARTSParser p, int id )
ASTImplicitHighAndExpression.jjtAccept ( SMARTSParserVisitor visitor, Object data ) :  Object

cdk-1.0.1.jar, ASTLowAndBond.class
package org.openscience.cdk.smiles.smarts.parser
ASTLowAndBond.ASTLowAndBond ( int id )
ASTLowAndBond.ASTLowAndBond ( SMARTSParser p, int id )
ASTLowAndBond.jjtAccept ( SMARTSParserVisitor visitor, Object data ) :  Object

cdk-1.0.1.jar, ASTLowAndExpression.class
package org.openscience.cdk.smiles.smarts.parser
ASTLowAndExpression.ASTLowAndExpression ( int id )
ASTLowAndExpression.ASTLowAndExpression ( SMARTSParser p, int id )
ASTLowAndExpression.jjtAccept ( SMARTSParserVisitor visitor, Object data ) :  Object

cdk-1.0.1.jar, ASTNotBond.class
package org.openscience.cdk.smiles.smarts.parser
ASTNotBond.ASTNotBond ( int id )
ASTNotBond.ASTNotBond ( SMARTSParser p, int id )
ASTNotBond.getType ( ) :  int
ASTNotBond.jjtAccept ( SMARTSParserVisitor visitor, Object data ) :  Object
ASTNotBond.setType ( int type ) :  void

cdk-1.0.1.jar, ASTNotExpression.class
package org.openscience.cdk.smiles.smarts.parser
ASTNotExpression.ASTNotExpression ( int id )
ASTNotExpression.ASTNotExpression ( SMARTSParser p, int id )
ASTNotExpression.getType ( ) :  int
ASTNotExpression.jjtAccept ( SMARTSParserVisitor visitor, Object data ) :  Object
ASTNotExpression.setType ( int type ) :  void

cdk-1.0.1.jar, ASTOrBond.class
package org.openscience.cdk.smiles.smarts.parser
ASTOrBond.ASTOrBond ( int id )
ASTOrBond.ASTOrBond ( SMARTSParser p, int id )
ASTOrBond.jjtAccept ( SMARTSParserVisitor visitor, Object data ) :  Object

cdk-1.0.1.jar, ASTOrExpression.class
package org.openscience.cdk.smiles.smarts.parser
ASTOrExpression.ASTOrExpression ( int id )
ASTOrExpression.ASTOrExpression ( SMARTSParser p, int id )
ASTOrExpression.jjtAccept ( SMARTSParserVisitor visitor, Object data ) :  Object

cdk-1.0.1.jar, ASTPrimitiveAtomExpression.class
package org.openscience.cdk.smiles.smarts.parser
ASTPrimitiveAtomExpression.ASTPrimitiveAtomExpression ( int id )
ASTPrimitiveAtomExpression.ASTPrimitiveAtomExpression ( SMARTSParser p, int id )
ASTPrimitiveAtomExpression.jjtAccept ( SMARTSParserVisitor visitor, Object data ) :  Object

cdk-1.0.1.jar, ASTReaction.class
package org.openscience.cdk.smiles.smarts.parser
ASTReaction.ASTReaction ( int id )
ASTReaction.ASTReaction ( SMARTSParser p, int id )
ASTReaction.jjtAccept ( SMARTSParserVisitor visitor, Object data ) :  Object

cdk-1.0.1.jar, ASTRecursiveSmartsExpression.class
package org.openscience.cdk.smiles.smarts.parser
ASTRecursiveSmartsExpression.ASTRecursiveSmartsExpression ( int id )
ASTRecursiveSmartsExpression.ASTRecursiveSmartsExpression ( SMARTSParser p, int id )
ASTRecursiveSmartsExpression.jjtAccept ( SMARTSParserVisitor visitor, Object data ) :  Object

cdk-1.0.1.jar, ASTRingConnectivity.class
package org.openscience.cdk.smiles.smarts.parser
ASTRingConnectivity.ASTRingConnectivity ( int id )
ASTRingConnectivity.ASTRingConnectivity ( SMARTSParser p, int id )
ASTRingConnectivity.getNumOfConnection ( ) :  int
ASTRingConnectivity.jjtAccept ( SMARTSParserVisitor visitor, Object data ) :  Object
ASTRingConnectivity.setNumOfConnection ( int numOfConnection ) :  void

cdk-1.0.1.jar, ASTRingIdentifier.class
package org.openscience.cdk.smiles.smarts.parser
ASTRingIdentifier.ASTRingIdentifier ( int id )
ASTRingIdentifier.ASTRingIdentifier ( SMARTSParser p, int id )
ASTRingIdentifier.getRingId ( ) :  int
ASTRingIdentifier.jjtAccept ( SMARTSParserVisitor visitor, Object data ) :  Object
ASTRingIdentifier.setRingId ( int ringId ) :  void

cdk-1.0.1.jar, ASTRingMembership.class
package org.openscience.cdk.smiles.smarts.parser
ASTRingMembership.ASTRingMembership ( int id )
ASTRingMembership.ASTRingMembership ( SMARTSParser p, int id )
ASTRingMembership.getNumOfMembership ( ) :  int
ASTRingMembership.jjtAccept ( SMARTSParserVisitor visitor, Object data ) :  Object
ASTRingMembership.setNumOfMembership ( int numOfMembership ) :  void

cdk-1.0.1.jar, ASTSimpleBond.class
package org.openscience.cdk.smiles.smarts.parser
ASTSimpleBond.ASTSimpleBond ( int id )
ASTSimpleBond.ASTSimpleBond ( SMARTSParser p, int id )
ASTSimpleBond.getBondType ( ) :  int
ASTSimpleBond.jjtAccept ( SMARTSParserVisitor visitor, Object data ) :  Object
ASTSimpleBond.setBondType ( int bondType ) :  void

cdk-1.0.1.jar, ASTSmallestRingSize.class
package org.openscience.cdk.smiles.smarts.parser
ASTSmallestRingSize.ASTSmallestRingSize ( int id )
ASTSmallestRingSize.ASTSmallestRingSize ( SMARTSParser p, int id )
ASTSmallestRingSize.getSize ( ) :  int
ASTSmallestRingSize.jjtAccept ( SMARTSParserVisitor visitor, Object data ) :  Object
ASTSmallestRingSize.setSize ( int size ) :  void

cdk-1.0.1.jar, ASTSmarts.class
package org.openscience.cdk.smiles.smarts.parser
ASTSmarts.ASTSmarts ( int id )
ASTSmarts.ASTSmarts ( SMARTSParser p, int id )
ASTSmarts.jjtAccept ( SMARTSParserVisitor visitor, Object data ) :  Object

cdk-1.0.1.jar, ASTStart.class
package org.openscience.cdk.smiles.smarts.parser
ASTStart.ASTStart ( int id )
ASTStart.ASTStart ( SMARTSParser p, int id )
ASTStart.jjtAccept ( SMARTSParserVisitor visitor, Object data ) :  Object

cdk-1.0.1.jar, ASTTotalConnectivity.class
package org.openscience.cdk.smiles.smarts.parser
ASTTotalConnectivity.ASTTotalConnectivity ( int id )
ASTTotalConnectivity.ASTTotalConnectivity ( SMARTSParser p, int id )
ASTTotalConnectivity.getNumOfConnection ( ) :  int
ASTTotalConnectivity.jjtAccept ( SMARTSParserVisitor visitor, Object data ) :  Object
ASTTotalConnectivity.setNumOfConnection ( int numOfConnection ) :  void

cdk-1.0.1.jar, ASTTotalHCount.class
package org.openscience.cdk.smiles.smarts.parser
ASTTotalHCount.ASTTotalHCount ( int id )
ASTTotalHCount.ASTTotalHCount ( SMARTSParser p, int id )
ASTTotalHCount.getCount ( ) :  int
ASTTotalHCount.jjtAccept ( SMARTSParserVisitor visitor, Object data ) :  Object
ASTTotalHCount.setCount ( int count ) :  void

cdk-1.0.1.jar, ASTValence.class
package org.openscience.cdk.smiles.smarts.parser
ASTValence.ASTValence ( int id )
ASTValence.ASTValence ( SMARTSParser p, int id )
ASTValence.getOrder ( ) :  int
ASTValence.jjtAccept ( SMARTSParserVisitor visitor, Object data ) :  Object
ASTValence.setOrder ( int order ) :  void

cdk-1.0.1.jar, AtomicNumberAtom.class
package org.openscience.cdk.isomorphism.matchers.smarts
AtomicNumberAtom.AtomicNumberAtom ( int atomicNumber )
AtomicNumberAtom.matches ( IAtom atom ) :  boolean

cdk-1.0.1.jar, BooleanResult.class
package org.openscience.cdk.qsar.result
BooleanResult.length ( ) :  int

cdk-1.0.1.jar, BracketAtom.class
package org.openscience.cdk.isomorphism.matchers.smarts
BracketAtom.BracketAtom ( )
BracketAtom.toString ( ) :  String

cdk-1.0.1.jar, CDKSourceCodeWriter.class
package org.openscience.cdk.io
CDKSourceCodeWriter.writeAtomContainer ( IAtomContainer molecule ) :  void

cdk-1.0.1.jar, ColumnAtom.class
package org.openscience.cdk.isomorphism.matchers.smarts
ColumnAtom.ColumnAtom ( )
ColumnAtom.toString ( ) :  String

cdk-1.0.1.jar, DoubleArrayResult.class
package org.openscience.cdk.qsar.result
DoubleArrayResult.length ( ) :  int

cdk-1.0.1.jar, DoubleResult.class
package org.openscience.cdk.qsar.result
DoubleResult.length ( ) :  int

cdk-1.0.1.jar, ExplicitConnectionAtom.class
package org.openscience.cdk.isomorphism.matchers.smarts
ExplicitConnectionAtom.ExplicitConnectionAtom ( )
ExplicitConnectionAtom.ExplicitConnectionAtom ( int connection )
ExplicitConnectionAtom.getNumOfConnection ( ) :  int
ExplicitConnectionAtom.matches ( IAtom atom ) :  boolean
ExplicitConnectionAtom.setNumOfConnection ( int numOfConnection ) :  void

cdk-1.0.1.jar, GeometryTools.class
package org.openscience.cdk.geometry
GeometryTools.has2DCoordinatesNew ( IChemModel model ) [static] :  int
GeometryTools.has3DCoordinates ( IChemModel model ) [static] :  boolean

cdk-1.0.1.jar, ICDKSelectionChangeListener.class
package org.openscience.cdk.event
ICDKSelectionChangeListener.stateChanged ( EventObject p1 ) [abstract] :  void

cdk-1.0.1.jar, IDescriptorResult.class
package org.openscience.cdk.qsar.result
IDescriptorResult.length ( ) [abstract] :  int

cdk-1.0.1.jar, IntegerArrayResult.class
package org.openscience.cdk.qsar.result
IntegerArrayResult.length ( ) :  int

cdk-1.0.1.jar, IntegerResult.class
package org.openscience.cdk.qsar.result
IntegerResult.length ( ) :  int

cdk-1.0.1.jar, LogicalOperatorAtom.class
package org.openscience.cdk.isomorphism.matchers.smarts
LogicalOperatorAtom.getFlag ( int flagType ) :  boolean
LogicalOperatorAtom.getLeft ( ) :  IQueryAtom
LogicalOperatorAtom.getOperator ( ) :  String
LogicalOperatorAtom.getRight ( ) :  IQueryAtom
LogicalOperatorAtom.LogicalOperatorAtom ( )
LogicalOperatorAtom.matches ( IAtom atom ) :  boolean
LogicalOperatorAtom.setLeft ( IQueryAtom left ) :  void
LogicalOperatorAtom.setOperator ( String name ) :  void
LogicalOperatorAtom.setRight ( IQueryAtom right ) :  void

cdk-1.0.1.jar, LogicalOperatorBond.class
package org.openscience.cdk.isomorphism.matchers.smarts
LogicalOperatorBond.getLeft ( ) :  IQueryBond
LogicalOperatorBond.getOperator ( ) :  String
LogicalOperatorBond.getRight ( ) :  IQueryBond
LogicalOperatorBond.LogicalOperatorBond ( )
LogicalOperatorBond.matches ( IBond bond ) :  boolean
LogicalOperatorBond.setAtoms ( IAtom[ ] atoms ) :  void
LogicalOperatorBond.setLeft ( IQueryBond left ) :  void
LogicalOperatorBond.setOperator ( String name ) :  void
LogicalOperatorBond.setRight ( IQueryBond right ) :  void

cdk-1.0.1.jar, MassAtom.class
package org.openscience.cdk.isomorphism.matchers.smarts
MassAtom.MassAtom ( int m_mass )
MassAtom.matches ( IAtom atom ) :  boolean
MassAtom.toString ( ) :  String

cdk-1.0.1.jar, Node.class
package org.openscience.cdk.smiles.smarts.parser
Node.jjtAccept ( SMARTSParserVisitor p1, Object p2 ) [abstract] :  Object
Node.jjtAddChild ( Node p1, int p2 ) [abstract] :  void
Node.jjtClose ( ) [abstract] :  void
Node.jjtGetChild ( int p1 ) [abstract] :  Node
Node.jjtGetNumChildren ( ) [abstract] :  int
Node.jjtGetParent ( ) [abstract] :  Node
Node.jjtOpen ( ) [abstract] :  void
Node.jjtRemoveChild ( int p1 ) [abstract] :  void
Node.jjtSetParent ( Node p1 ) [abstract] :  void

cdk-1.0.1.jar, ParseException.class
package org.openscience.cdk.smiles.smarts.parser
ParseException.add_escapes ( String str ) :  String
ParseException.getMessage ( ) :  String
ParseException.ParseException ( )
ParseException.ParseException ( String message )
ParseException.ParseException ( Token currentTokenVal, int[ ][ ] expectedTokenSequencesVal, String[ ] tokenImageVal )

cdk-1.0.1.jar, RecurseAtom.class
package org.openscience.cdk.isomorphism.matchers.smarts
RecurseAtom.RecurseAtom ( )

cdk-1.0.1.jar, RingBond.class
package org.openscience.cdk.isomorphism.matchers.smarts
RingBond.matches ( IBond bond ) :  boolean
RingBond.RingBond ( )

cdk-1.0.1.jar, RingIdentifierAtom.class
package org.openscience.cdk.isomorphism.matchers.smarts
RingIdentifierAtom.getAtom ( ) :  IQueryAtom
RingIdentifierAtom.getRingBond ( ) :  IQueryBond
RingIdentifierAtom.matches ( IAtom atom ) :  boolean
RingIdentifierAtom.RingIdentifierAtom ( )
RingIdentifierAtom.setAtom ( IQueryAtom atom ) :  void
RingIdentifierAtom.setRingBond ( IQueryBond bond ) :  void

cdk-1.0.1.jar, RingMembershipAtom.class
package org.openscience.cdk.isomorphism.matchers.smarts
RingMembershipAtom.matches ( IAtom atom ) :  boolean
RingMembershipAtom.RingMembershipAtom ( int num )

cdk-1.0.1.jar, RingSetManipulator.class
package org.openscience.cdk.tools.manipulator
RingSetManipulator.getAtomCount ( IRingSet set ) [static] :  int
RingSetManipulator.getBondCount ( IRingSet set ) [static] :  int

cdk-1.0.1.jar, SimpleCharStream.class
package org.openscience.cdk.smiles.smarts.parser
SimpleCharStream.adjustBeginLineColumn ( int newLine, int newCol ) :  void
SimpleCharStream.backup ( int amount ) :  void
SimpleCharStream.BeginToken ( ) :  char
SimpleCharStream.Done ( ) :  void
SimpleCharStream.ExpandBuff ( boolean wrapAround ) :  void
SimpleCharStream.FillBuff ( ) :  void
SimpleCharStream.getBeginColumn ( ) :  int
SimpleCharStream.getBeginLine ( ) :  int
SimpleCharStream.getColumn ( ) :  int *DEPRECATED*
SimpleCharStream.getEndColumn ( ) :  int
SimpleCharStream.getEndLine ( ) :  int
SimpleCharStream.GetImage ( ) :  String
SimpleCharStream.getLine ( ) :  int *DEPRECATED*
SimpleCharStream.GetSuffix ( int len ) :  char[ ]
SimpleCharStream.readChar ( ) :  char
SimpleCharStream.ReInit ( InputStream dstream ) :  void
SimpleCharStream.ReInit ( InputStream dstream, int startline, int startcolumn ) :  void
SimpleCharStream.ReInit ( InputStream dstream, int startline, int startcolumn, int buffersize ) :  void
SimpleCharStream.ReInit ( Reader dstream ) :  void
SimpleCharStream.ReInit ( Reader dstream, int startline, int startcolumn ) :  void
SimpleCharStream.ReInit ( Reader dstream, int startline, int startcolumn, int buffersize ) :  void
SimpleCharStream.SimpleCharStream ( InputStream dstream )
SimpleCharStream.SimpleCharStream ( InputStream dstream, int startline, int startcolumn )
SimpleCharStream.SimpleCharStream ( InputStream dstream, int startline, int startcolumn, int buffersize )
SimpleCharStream.SimpleCharStream ( Reader dstream )
SimpleCharStream.SimpleCharStream ( Reader dstream, int startline, int startcolumn )
SimpleCharStream.SimpleCharStream ( Reader dstream, int startline, int startcolumn, int buffersize )
SimpleCharStream.UpdateLineColumn ( char c ) :  void

cdk-1.0.1.jar, SimpleNode.class
package org.openscience.cdk.smiles.smarts.parser
SimpleNode.childrenAccept ( SMARTSParserVisitor visitor, Object data ) :  Object
SimpleNode.clone ( ) :  Object
SimpleNode.dump ( String prefix ) :  void
SimpleNode.getId ( ) :  int
SimpleNode.getParser ( ) :  SMARTSParser
SimpleNode.jjtAccept ( SMARTSParserVisitor visitor, Object data ) :  Object
SimpleNode.jjtAddChild ( Node n, int i ) :  void
SimpleNode.jjtClose ( ) :  void
SimpleNode.jjtGetChild ( int i ) :  Node
SimpleNode.jjtGetNumChildren ( ) :  int
SimpleNode.jjtGetParent ( ) :  Node
SimpleNode.jjtOpen ( ) :  void
SimpleNode.jjtRemoveChild ( int i ) :  void
SimpleNode.jjtSetParent ( Node n ) :  void
SimpleNode.setId ( int id ) :  void
SimpleNode.setParser ( SMARTSParser parser ) :  void
SimpleNode.SimpleNode ( int i )
SimpleNode.SimpleNode ( SMARTSParser p, int i )
SimpleNode.toString ( ) :  String
SimpleNode.toString ( String prefix ) :  String

cdk-1.0.1.jar, SmallestRingAtom.class
package org.openscience.cdk.isomorphism.matchers.smarts
SmallestRingAtom.matches ( IAtom atom ) :  boolean
SmallestRingAtom.SmallestRingAtom ( int size )

cdk-1.0.1.jar, Smarts2MQLVisitor.class
package org.openscience.cdk.smiles.smarts.parser.visitor
Smarts2MQLVisitor.Smarts2MQLVisitor ( )
Smarts2MQLVisitor.visit ( ASTAliphatic node, Object data ) :  Object
Smarts2MQLVisitor.visit ( ASTAnyAtom node, Object data ) :  Object
Smarts2MQLVisitor.visit ( ASTAromatic node, Object data ) :  Object
Smarts2MQLVisitor.visit ( ASTAtom node, Object data ) :  Object
Smarts2MQLVisitor.visit ( ASTAtomicMass node, Object data ) :  Object
Smarts2MQLVisitor.visit ( ASTAtomicNumber node, Object data ) :  Object
Smarts2MQLVisitor.visit ( ASTCharge node, Object data ) :  Object
Smarts2MQLVisitor.visit ( ASTChirality node, Object data ) :  Object
Smarts2MQLVisitor.visit ( ASTElement node, Object data ) :  Object
Smarts2MQLVisitor.visit ( ASTExplicitAtom node, Object data ) :  Object
Smarts2MQLVisitor.visit ( ASTExplicitConnectivity node, Object data ) :  Object
Smarts2MQLVisitor.visit ( ASTExplicitHighAndBond node, Object data ) :  Object
Smarts2MQLVisitor.visit ( ASTExplicitHighAndExpression node, Object data ) :  Object
Smarts2MQLVisitor.visit ( ASTGroup node, Object data ) :  Object
Smarts2MQLVisitor.visit ( ASTImplicitHCount node, Object data ) :  Object
Smarts2MQLVisitor.visit ( ASTImplicitHighAndBond node, Object data ) :  Object
Smarts2MQLVisitor.visit ( ASTImplicitHighAndExpression node, Object data ) :  Object
Smarts2MQLVisitor.visit ( ASTLowAndBond node, Object data ) :  Object
Smarts2MQLVisitor.visit ( ASTLowAndExpression node, Object data ) :  Object
Smarts2MQLVisitor.visit ( ASTNotBond node, Object data ) :  Object
Smarts2MQLVisitor.visit ( ASTNotExpression node, Object data ) :  Object
Smarts2MQLVisitor.visit ( ASTOrBond node, Object data ) :  Object
Smarts2MQLVisitor.visit ( ASTOrExpression node, Object data ) :  Object
Smarts2MQLVisitor.visit ( ASTReaction node, Object data ) :  Object
Smarts2MQLVisitor.visit ( ASTRecursiveSmartsExpression node, Object data ) :  Object
Smarts2MQLVisitor.visit ( ASTRingConnectivity node, Object data ) :  Object
Smarts2MQLVisitor.visit ( ASTRingIdentifier node, Object data ) :  Object
Smarts2MQLVisitor.visit ( ASTRingMembership node, Object data ) :  Object
Smarts2MQLVisitor.visit ( ASTSimpleBond node, Object data ) :  Object
Smarts2MQLVisitor.visit ( ASTSmallestRingSize node, Object data ) :  Object
Smarts2MQLVisitor.visit ( ASTSmarts node, Object data ) :  Object
Smarts2MQLVisitor.visit ( ASTStart node, Object data ) :  Object
Smarts2MQLVisitor.visit ( ASTTotalConnectivity node, Object data ) :  Object
Smarts2MQLVisitor.visit ( ASTTotalHCount node, Object data ) :  Object
Smarts2MQLVisitor.visit ( ASTValence node, Object data ) :  Object
Smarts2MQLVisitor.visit ( SimpleNode node, Object data ) :  Object

cdk-1.0.1.jar, SmartsDumpVisitor.class
package org.openscience.cdk.smiles.smarts.parser.visitor
SmartsDumpVisitor.SmartsDumpVisitor ( )
SmartsDumpVisitor.visit ( ASTAliphatic node, Object data ) :  Object
SmartsDumpVisitor.visit ( ASTAnyAtom node, Object data ) :  Object
SmartsDumpVisitor.visit ( ASTAromatic node, Object data ) :  Object
SmartsDumpVisitor.visit ( ASTAtom node, Object data ) :  Object
SmartsDumpVisitor.visit ( ASTAtomicMass node, Object data ) :  Object
SmartsDumpVisitor.visit ( ASTAtomicNumber node, Object data ) :  Object
SmartsDumpVisitor.visit ( ASTCharge node, Object data ) :  Object
SmartsDumpVisitor.visit ( ASTChirality node, Object data ) :  Object
SmartsDumpVisitor.visit ( ASTElement node, Object data ) :  Object
SmartsDumpVisitor.visit ( ASTExplicitAtom node, Object data ) :  Object
SmartsDumpVisitor.visit ( ASTExplicitConnectivity node, Object data ) :  Object
SmartsDumpVisitor.visit ( ASTExplicitHighAndBond node, Object data ) :  Object
SmartsDumpVisitor.visit ( ASTExplicitHighAndExpression node, Object data ) :  Object
SmartsDumpVisitor.visit ( ASTGroup node, Object data ) :  Object
SmartsDumpVisitor.visit ( ASTImplicitHCount node, Object data ) :  Object
SmartsDumpVisitor.visit ( ASTImplicitHighAndBond node, Object data ) :  Object
SmartsDumpVisitor.visit ( ASTImplicitHighAndExpression node, Object data ) :  Object
SmartsDumpVisitor.visit ( ASTLowAndBond node, Object data ) :  Object
SmartsDumpVisitor.visit ( ASTLowAndExpression node, Object data ) :  Object
SmartsDumpVisitor.visit ( ASTNotBond node, Object data ) :  Object
SmartsDumpVisitor.visit ( ASTNotExpression node, Object data ) :  Object
SmartsDumpVisitor.visit ( ASTOrBond node, Object data ) :  Object
SmartsDumpVisitor.visit ( ASTOrExpression node, Object data ) :  Object
SmartsDumpVisitor.visit ( ASTPrimitiveAtomExpression node, Object data ) :  Object
SmartsDumpVisitor.visit ( ASTReaction node, Object data ) :  Object
SmartsDumpVisitor.visit ( ASTRecursiveSmartsExpression node, Object data ) :  Object
SmartsDumpVisitor.visit ( ASTRingConnectivity node, Object data ) :  Object
SmartsDumpVisitor.visit ( ASTRingIdentifier node, Object data ) :  Object
SmartsDumpVisitor.visit ( ASTRingMembership node, Object data ) :  Object
SmartsDumpVisitor.visit ( ASTSimpleBond node, Object data ) :  Object
SmartsDumpVisitor.visit ( ASTSmallestRingSize node, Object data ) :  Object
SmartsDumpVisitor.visit ( ASTSmarts node, Object data ) :  Object
SmartsDumpVisitor.visit ( ASTStart node, Object data ) :  Object
SmartsDumpVisitor.visit ( ASTTotalConnectivity node, Object data ) :  Object
SmartsDumpVisitor.visit ( ASTTotalHCount node, Object data ) :  Object
SmartsDumpVisitor.visit ( ASTValence node, Object data ) :  Object
SmartsDumpVisitor.visit ( SimpleNode node, Object data ) :  Object

cdk-1.0.1.jar, SMARTSOperatorAtom.class
package org.openscience.cdk.isomorphism.matchers.smarts
SMARTSOperatorAtom.SMARTSOperatorAtom ( IQueryAtomContainer m_IQAT )

cdk-1.0.1.jar, SMARTSParser.class
package org.openscience.cdk.smiles.smarts
SMARTSParser.ConsumeToken ( ) :  void
SMARTSParser.EndBracket ( ) :  void
SMARTSParser.EndColumn ( ) :  void
SMARTSParser.MassAtom ( ) :  void
SMARTSParser.Recursion ( ) :  void
SMARTSParser.StartBracket ( ) :  void
SMARTSParser.StartColumn ( ) :  void
SMARTSParser.ValenyAtom ( ) :  void
package org.openscience.cdk.smiles.smarts.parser
SMARTSParser.Aliphatic ( ) :  void
SMARTSParser.AnyAtom ( ) :  void
SMARTSParser.Aromatic ( ) :  void
SMARTSParser.AtomExpression ( ) :  ASTAtom
SMARTSParser.AtomicMass ( ) :  void
SMARTSParser.AtomicNumber ( ) :  void
SMARTSParser.Charge ( ) :  void
SMARTSParser.Chirality ( ) :  void
SMARTSParser.disable_tracing ( ) :  void
SMARTSParser.enable_tracing ( ) :  void
SMARTSParser.ExplicitAtomExpression ( ) :  void
SMARTSParser.ExplicitConnectivity ( ) :  void
SMARTSParser.ExplicitHighAndBond ( ) :  void
SMARTSParser.ExplicitHighAndExpression ( ) :  void
SMARTSParser.generateParseException ( ) :  ParseException
SMARTSParser.getNextToken ( ) :  Token
SMARTSParser.getToken ( int index ) :  Token
SMARTSParser.GroupExpression ( ) :  void
SMARTSParser.ImplicitHCount ( ) :  void
SMARTSParser.ImplicitHighAndBond ( ) :  void
SMARTSParser.ImplicitHighAndExpression ( ) :  void
SMARTSParser.LowAndBond ( ) :  void
SMARTSParser.LowAndExpression ( ) :  void
SMARTSParser.NoHydrogenElement ( ) :  void
SMARTSParser.NotBond ( ) :  void
SMARTSParser.NotExpression ( ) :  void
SMARTSParser.OrBond ( ) :  void
SMARTSParser.OrExpression ( ) :  void
SMARTSParser.parse ( String smarts ) [static] :  QueryAtomContainer
SMARTSParser.PrimitiveAtomExpression ( ) :  void
SMARTSParser.ReactionExpression ( ) :  void
SMARTSParser.RecursiveSmartsExpression ( ) :  void
SMARTSParser.ReInit ( InputStream stream ) :  void
SMARTSParser.ReInit ( Reader stream ) :  void
SMARTSParser.ReInit ( SMARTSParserTokenManager tm ) :  void
SMARTSParser.RingConnectivity ( ) :  void
SMARTSParser.RingIdentifier ( ) :  void
SMARTSParser.RingMembership ( ) :  void
SMARTSParser.SimpleBond ( ) :  void
SMARTSParser.SmallestRingSize ( ) :  void
SMARTSParser.SmartsExpression ( ) :  void
SMARTSParser.SMARTSParser ( InputStream stream )
SMARTSParser.SMARTSParser ( Reader stream )
SMARTSParser.SMARTSParser ( SMARTSParserTokenManager tm )
SMARTSParser.Start ( ) :  ASTStart
SMARTSParser.TotalConnectivity ( ) :  void
SMARTSParser.TotalHCount ( ) :  void
SMARTSParser.Valence ( ) :  void

cdk-1.0.1.jar, SMARTSParserTokenManager.class
package org.openscience.cdk.smiles.smarts.parser
SMARTSParserTokenManager.getNextToken ( ) :  Token
SMARTSParserTokenManager.jjFillToken ( ) :  Token
SMARTSParserTokenManager.ReInit ( SimpleCharStream stream ) :  void
SMARTSParserTokenManager.ReInit ( SimpleCharStream stream, int lexState ) :  void
SMARTSParserTokenManager.setDebugStream ( PrintStream ds ) :  void
SMARTSParserTokenManager.SMARTSParserTokenManager ( SimpleCharStream stream )
SMARTSParserTokenManager.SMARTSParserTokenManager ( SimpleCharStream stream, int lexState )
SMARTSParserTokenManager.SwitchTo ( int lexState ) :  void

cdk-1.0.1.jar, SMARTSParserVisitor.class
package org.openscience.cdk.smiles.smarts.parser
SMARTSParserVisitor.visit ( ASTAliphatic p1, Object p2 ) [abstract] :  Object
SMARTSParserVisitor.visit ( ASTAnyAtom p1, Object p2 ) [abstract] :  Object
SMARTSParserVisitor.visit ( ASTAromatic p1, Object p2 ) [abstract] :  Object
SMARTSParserVisitor.visit ( ASTAtom p1, Object p2 ) [abstract] :  Object
SMARTSParserVisitor.visit ( ASTAtomicMass p1, Object p2 ) [abstract] :  Object
SMARTSParserVisitor.visit ( ASTAtomicNumber p1, Object p2 ) [abstract] :  Object
SMARTSParserVisitor.visit ( ASTCharge p1, Object p2 ) [abstract] :  Object
SMARTSParserVisitor.visit ( ASTChirality p1, Object p2 ) [abstract] :  Object
SMARTSParserVisitor.visit ( ASTElement p1, Object p2 ) [abstract] :  Object
SMARTSParserVisitor.visit ( ASTExplicitAtom p1, Object p2 ) [abstract] :  Object
SMARTSParserVisitor.visit ( ASTExplicitConnectivity p1, Object p2 ) [abstract] :  Object
SMARTSParserVisitor.visit ( ASTExplicitHighAndBond p1, Object p2 ) [abstract] :  Object
SMARTSParserVisitor.visit ( ASTExplicitHighAndExpression p1, Object p2 ) [abstract] :  Object
SMARTSParserVisitor.visit ( ASTGroup p1, Object p2 ) [abstract] :  Object
SMARTSParserVisitor.visit ( ASTImplicitHCount p1, Object p2 ) [abstract] :  Object
SMARTSParserVisitor.visit ( ASTImplicitHighAndBond p1, Object p2 ) [abstract] :  Object
SMARTSParserVisitor.visit ( ASTImplicitHighAndExpression p1, Object p2 ) [abstract] :  Object
SMARTSParserVisitor.visit ( ASTLowAndBond p1, Object p2 ) [abstract] :  Object
SMARTSParserVisitor.visit ( ASTLowAndExpression p1, Object p2 ) [abstract] :  Object
SMARTSParserVisitor.visit ( ASTNotBond p1, Object p2 ) [abstract] :  Object
SMARTSParserVisitor.visit ( ASTNotExpression p1, Object p2 ) [abstract] :  Object
SMARTSParserVisitor.visit ( ASTOrBond p1, Object p2 ) [abstract] :  Object
SMARTSParserVisitor.visit ( ASTOrExpression p1, Object p2 ) [abstract] :  Object
SMARTSParserVisitor.visit ( ASTReaction p1, Object p2 ) [abstract] :  Object
SMARTSParserVisitor.visit ( ASTRecursiveSmartsExpression p1, Object p2 ) [abstract] :  Object
SMARTSParserVisitor.visit ( ASTRingConnectivity p1, Object p2 ) [abstract] :  Object
SMARTSParserVisitor.visit ( ASTRingIdentifier p1, Object p2 ) [abstract] :  Object
SMARTSParserVisitor.visit ( ASTRingMembership p1, Object p2 ) [abstract] :  Object
SMARTSParserVisitor.visit ( ASTSimpleBond p1, Object p2 ) [abstract] :  Object
SMARTSParserVisitor.visit ( ASTSmallestRingSize p1, Object p2 ) [abstract] :  Object
SMARTSParserVisitor.visit ( ASTSmarts p1, Object p2 ) [abstract] :  Object
SMARTSParserVisitor.visit ( ASTStart p1, Object p2 ) [abstract] :  Object
SMARTSParserVisitor.visit ( ASTTotalConnectivity p1, Object p2 ) [abstract] :  Object
SMARTSParserVisitor.visit ( ASTTotalHCount p1, Object p2 ) [abstract] :  Object
SMARTSParserVisitor.visit ( ASTValence p1, Object p2 ) [abstract] :  Object
SMARTSParserVisitor.visit ( SimpleNode p1, Object p2 ) [abstract] :  Object

cdk-1.0.1.jar, SMARTSQueryTool.class
package org.openscience.cdk.smiles.smarts
SMARTSQueryTool.SMARTSQueryTool ( String smarts, boolean useJJTree )

cdk-1.0.1.jar, SmartsQueryVisitor.class
package org.openscience.cdk.smiles.smarts.parser.visitor
SmartsQueryVisitor.getRoot ( Node node ) :  ASTStart
SmartsQueryVisitor.SmartsQueryVisitor ( )
SmartsQueryVisitor.visit ( ASTAliphatic node, Object data ) :  Object
SmartsQueryVisitor.visit ( ASTAnyAtom node, Object data ) :  Object
SmartsQueryVisitor.visit ( ASTAromatic node, Object data ) :  Object
SmartsQueryVisitor.visit ( ASTAtom node, Object data ) :  Object
SmartsQueryVisitor.visit ( ASTAtomicMass node, Object data ) :  Object
SmartsQueryVisitor.visit ( ASTAtomicNumber node, Object data ) :  Object
SmartsQueryVisitor.visit ( ASTCharge node, Object data ) :  Object
SmartsQueryVisitor.visit ( ASTChirality node, Object data ) :  Object
SmartsQueryVisitor.visit ( ASTElement node, Object data ) :  Object
SmartsQueryVisitor.visit ( ASTExplicitAtom node, Object data ) :  Object
SmartsQueryVisitor.visit ( ASTExplicitConnectivity node, Object data ) :  Object
SmartsQueryVisitor.visit ( ASTExplicitHighAndBond node, Object data ) :  Object
SmartsQueryVisitor.visit ( ASTExplicitHighAndExpression node, Object data ) :  Object
SmartsQueryVisitor.visit ( ASTGroup node, Object data ) :  Object
SmartsQueryVisitor.visit ( ASTImplicitHCount node, Object data ) :  Object
SmartsQueryVisitor.visit ( ASTImplicitHighAndBond node, Object data ) :  Object
SmartsQueryVisitor.visit ( ASTImplicitHighAndExpression node, Object data ) :  Object
SmartsQueryVisitor.visit ( ASTLowAndBond node, Object data ) :  Object
SmartsQueryVisitor.visit ( ASTLowAndExpression node, Object data ) :  Object
SmartsQueryVisitor.visit ( ASTNotBond node, Object data ) :  Object
SmartsQueryVisitor.visit ( ASTNotExpression node, Object data ) :  Object
SmartsQueryVisitor.visit ( ASTOrBond node, Object data ) :  Object
SmartsQueryVisitor.visit ( ASTOrExpression node, Object data ) :  Object
SmartsQueryVisitor.visit ( ASTReaction node, Object data ) :  Object
SmartsQueryVisitor.visit ( ASTRecursiveSmartsExpression node, Object data ) :  Object
SmartsQueryVisitor.visit ( ASTRingConnectivity node, Object data ) :  Object
SmartsQueryVisitor.visit ( ASTRingIdentifier node, Object data ) :  Object
SmartsQueryVisitor.visit ( ASTRingMembership node, Object data ) :  Object
SmartsQueryVisitor.visit ( ASTSimpleBond node, Object data ) :  Object
SmartsQueryVisitor.visit ( ASTSmallestRingSize node, Object data ) :  Object
SmartsQueryVisitor.visit ( ASTSmarts node, Object data ) :  Object
SmartsQueryVisitor.visit ( ASTStart node, Object data ) :  Object
SmartsQueryVisitor.visit ( ASTTotalConnectivity node, Object data ) :  Object
SmartsQueryVisitor.visit ( ASTTotalHCount node, Object data ) :  Object
SmartsQueryVisitor.visit ( ASTValence node, Object data ) :  Object
SmartsQueryVisitor.visit ( SimpleNode node, Object data ) :  Object

cdk-1.0.1.jar, StereoBond.class
package org.openscience.cdk.isomorphism.matchers.smarts
StereoBond.matches ( IBond bond ) :  boolean
StereoBond.StereoBond ( )

cdk-1.0.1.jar, Token.class
package org.openscience.cdk.smiles.smarts.parser
Token.newToken ( int ofKind ) [static] :  Token
Token.Token ( )
Token.toString ( ) :  String

cdk-1.0.1.jar, TokenMgrError.class
package org.openscience.cdk.smiles.smarts.parser
TokenMgrError.addEscapes ( String str ) [static] :  String
TokenMgrError.getMessage ( ) :  String
TokenMgrError.LexicalError ( boolean EOFSeen, int lexState, int errorLine, int errorColumn, String errorAfter, char curChar ) [static] :  String
TokenMgrError.TokenMgrError ( )
TokenMgrError.TokenMgrError ( boolean EOFSeen, int lexState, int errorLine, int errorColumn, String errorAfter, char curChar, int reason )
TokenMgrError.TokenMgrError ( String message, int reason )

cdk-1.0.1.jar, TotalConnectionAtom.class
package org.openscience.cdk.isomorphism.matchers.smarts
TotalConnectionAtom.setSymbol ( String ss ) :  void
TotalConnectionAtom.toString ( ) :  String

cdk-1.0.1.jar, TotalHCountAtom.class
package org.openscience.cdk.isomorphism.matchers.smarts
TotalHCountAtom.setSymbol ( String ss ) :  void

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Removed Methods (19)

cdk-1.0.jar, AtomContainerSetManipulator.class
package org.openscience.cdk.tools.manipulator
AtomContainerSetManipulator.getAllInOneContainer ( IAtomContainerSet set ) [static] :  IAtomContainer *DEPRECATED*

cdk-1.0.jar, ChemFileManipulator.class
package org.openscience.cdk.tools.manipulator
ChemFileManipulator.getAllInOneContainer ( IChemFile file ) [static] :  IAtomContainer *DEPRECATED*

cdk-1.0.jar, ChemModelManipulator.class
package org.openscience.cdk.tools.manipulator
ChemModelManipulator.getAllInOneContainer ( IChemModel chemModel ) [static] :  IAtomContainer *DEPRECATED*

cdk-1.0.jar, ChemSequenceManipulator.class
package org.openscience.cdk.tools.manipulator
ChemSequenceManipulator.getAllInOneContainer ( IChemSequence sequence ) [static] :  IAtomContainer *DEPRECATED*

cdk-1.0.jar, DoubleArrayResult.class
package org.openscience.cdk.qsar.result
DoubleArrayResult.size ( ) :  int

cdk-1.0.jar, IntegerArrayResult.class
package org.openscience.cdk.qsar.result
IntegerArrayResult.size ( ) :  int

cdk-1.0.jar, MoleculeSetManipulator.class
package org.openscience.cdk.tools.manipulator
MoleculeSetManipulator.getAllInOneContainer ( IMoleculeSet set ) [static] :  IAtomContainer *DEPRECATED*

cdk-1.0.jar, ReactionManipulator.class
package org.openscience.cdk.tools.manipulator
ReactionManipulator.getAllInOneContainer ( IReaction reaction ) [static] :  IAtomContainer *DEPRECATED*

cdk-1.0.jar, ReactionSetManipulator.class
package org.openscience.cdk.tools.manipulator
ReactionSetManipulator.getAllInOneContainer ( IReactionSet set ) [static] :  IAtomContainer *DEPRECATED*

cdk-1.0.jar, RingSetManipulator.class
package org.openscience.cdk.tools.manipulator
RingSetManipulator.getAllInOneContainer ( IRingSet ringSet ) [static] :  IAtomContainer *DEPRECATED*

cdk-1.0.jar, SMARTSParser.class
package org.openscience.cdk.smiles.smarts
SMARTSParser.ExpressionAtom ( ) :  void
SMARTSParser.FinalOperatorExpression ( ) :  void
SMARTSParser.InBracketsSMARTSAtom ( ) :  void
SMARTSParser.OperatorExpression ( ) :  void
SMARTSParser.SMARTSAtomExpression ( ) :  void

cdk-1.0.jar, SwingPainter.class
package org.openscience.cdk.renderer
TestRenderer.SwingPainter.paint ( Graphics g ) :  void
TestRenderer.SwingPainter.setMolecule ( IMolecule molecule ) :  void
TestRenderer.SwingPainter.TestRenderer.SwingPainter ( TestRenderer p1 )

cdk-1.0.jar, TestRenderer.class
package org.openscience.cdk.renderer
TestRenderer.main ( String[ ] args ) [static] :  void

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Problems with Data Types, High Severity (2)

	Change	Effect
1	This class has been removed.	A client program may be interrupted by NoClassDefFoundError exception.

	Change	Effect
1	This class has been removed.	A client program may be interrupted by NoClassDefFoundError exception.

cdk-1.0.jar
package org.openscience.cdk.renderer
[+] TestRenderer (1)
[+] TestRenderer.SwingPainter (1)

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Problems with Data Types, Low Severity (3)

	Change	Effect
1	Method setSymbol ( String ) has been overridden by setSymbol ( String )	Method setSymbol ( String ) will be called instead of setSymbol ( String ) in a client program.
2	Method toString ( ) has been overridden by toString ( )	Method toString ( ) will be called instead of toString ( ) in a client program.

	Change	Effect
1	Method setSymbol ( String ) has been overridden by setSymbol ( String )	Method setSymbol ( String ) will be called instead of setSymbol ( String ) in a client program.

cdk-1.0.jar
package org.openscience.cdk.isomorphism.matchers.smarts
[+] TotalConnectionAtom (2)
[+] TotalHCountAtom (1)

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Other Changes in Data Types (3)

	Change	Effect
1	Field TOTAL_H_COUNT has been added to this class.	No effect. NOTE: A static field from a super-interface of a client class may hide an added field (with the same name) inherited from the super-class of a client class and cause IncompatibleClassChangeError exception.

	Change	Effect
1	Field bondAromaticity has been added to this class.	No effect. NOTE: A static field from a super-interface of a client class may hide an added field (with the same name) inherited from the super-class of a client class and cause IncompatibleClassChangeError exception.

	Change	Effect
1	Abstract method length ( ) has been added to this interface.	No effect.

cdk-1.0.jar
package org.openscience.cdk
[+] CDKConstants (1)

package org.openscience.cdk.io.cml
[+] CMLCoreModule (1)

package org.openscience.cdk.qsar.result
[+] IDescriptorResult (1)

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Java ARchives (1)

cdk-1.0.jar

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