Source compatibility report for the CDK library between 1.4.14 and 1.4.15 versions

Test Info

Library Name	CDK
Version #1	1.4.14
Version #2	1.4.15

Test Results

Total Java ARchives	1
Total Methods / Classes	32167 / 3523
Verdict	Incompatible (4.1%)

Problem Summary

	Severity	Count
Added Methods	-	308
Removed Methods	High	0
Problems with Data Types	High	20
	Medium	0
	Low	0
Problems with Methods	High	0
	Medium	0
	Low	0
Other Changes in Data Types	-	1

Added Methods (308)

cdk-1.4.15.jar, AminoAcid.class
package org.openscience.cdk
AminoAcid.clone ( ) :  IAminoAcid
AminoAcid.clone ( ) :  IAtomContainer
AminoAcid.clone ( ) :  IMonomer
package org.openscience.cdk.silent
AminoAcid.clone ( ) :  IAminoAcid
AminoAcid.clone ( ) :  IAtomContainer
AminoAcid.clone ( ) :  IMonomer

cdk-1.4.15.jar, ArrowHeadWidth.class
package org.openscience.cdk.renderer.generators
ReactionSceneGenerator.ArrowHeadWidth.getDefault ( ) :  Double
ReactionSceneGenerator.ArrowHeadWidth.getDefault ( ) :  Object
ReactionSceneGenerator.ArrowHeadWidth.ReactionSceneGenerator.ArrowHeadWidth ( )

cdk-1.4.15.jar, AtomAtomMappingLineColor.class
package org.openscience.cdk.renderer.generators
MappingGenerator.AtomAtomMappingLineColor.getDefault ( ) :  Color
MappingGenerator.AtomAtomMappingLineColor.getDefault ( ) :  Object
MappingGenerator.AtomAtomMappingLineColor.MappingGenerator.AtomAtomMappingLineColor ( )

cdk-1.4.15.jar, AtomColorer.class
package org.openscience.cdk.renderer.generators
AtomNumberGenerator.AtomColorer.AtomNumberGenerator.AtomColorer ( )
AtomNumberGenerator.AtomColorer.getDefault ( ) :  IAtomColorer
AtomNumberGenerator.AtomColorer.getDefault ( ) :  Object

cdk-1.4.15.jar, AtomContainer.class
package org.openscience.cdk
AtomContainer.clone ( ) :  IAtomContainer
AtomContainer.isEmpty ( ) :  boolean
AtomContainer.setStereoElements ( List elements ) :  void
package org.openscience.cdk.silent
AtomContainer.clone ( ) :  IAtomContainer
AtomContainer.isEmpty ( ) :  boolean
AtomContainer.setStereoElements ( List elements ) :  void

cdk-1.4.15.jar, AtomContainerBoundsGenerator.class
package org.openscience.cdk.renderer.generators
AtomContainerBoundsGenerator.AtomContainerBoundsGenerator ( )
AtomContainerBoundsGenerator.generate ( IAtomContainer container, RendererModel model ) :  IRenderingElement
AtomContainerBoundsGenerator.generate ( IChemObject x0, RendererModel x1 ) :  IRenderingElement
AtomContainerBoundsGenerator.getParameters ( ) :  List

cdk-1.4.15.jar, AtomContainerSet.class
package org.openscience.cdk
AtomContainerSet.isEmpty ( ) :  boolean
package org.openscience.cdk.silent
AtomContainerSet.isEmpty ( ) :  boolean

cdk-1.4.15.jar, AtomMassGenerator.class
package org.openscience.cdk.renderer.generators
AtomMassGenerator.AtomMassGenerator ( )
AtomMassGenerator.showCarbon ( IAtom atom, IAtomContainer container, RendererModel model ) :  boolean

cdk-1.4.15.jar, AtomMassSymbolElement.class
package org.openscience.cdk.renderer.elements
AtomMassSymbolElement.AtomMassSymbolElement ( double xCoord, double yCoord, String symbol, Integer formalCharge, Integer hydrogenCount, int alignment, Integer atomMass, Color color )

cdk-1.4.15.jar, AtomNumberGenerator.class
package org.openscience.cdk.renderer.generators
AtomNumberGenerator.AtomNumberGenerator ( )
AtomNumberGenerator.generate ( IAtomContainer container, RendererModel model ) :  IRenderingElement
AtomNumberGenerator.generate ( IChemObject x0, RendererModel x1 ) :  IRenderingElement
AtomNumberGenerator.getParameters ( ) :  List

cdk-1.4.15.jar, AtomNumberTextColor.class
package org.openscience.cdk.renderer.generators
AtomNumberGenerator.AtomNumberTextColor.AtomNumberGenerator.AtomNumberTextColor ( )
AtomNumberGenerator.AtomNumberTextColor.getDefault ( ) :  Color
AtomNumberGenerator.AtomNumberTextColor.getDefault ( ) :  Object

cdk-1.4.15.jar, AtomParity.class
package org.openscience.cdk
AtomParity.map ( Map atoms, Map bonds ) :  IAtomParity
AtomParity.map ( Map x0, Map x1 ) :  IStereoElement
package org.openscience.cdk.silent
AtomParity.map ( Map atoms, Map bonds ) :  IAtomParity
AtomParity.map ( Map x0, Map x1 ) :  IStereoElement

cdk-1.4.15.jar, BioPolymer.class
package org.openscience.cdk
BioPolymer.clone ( ) :  IAtomContainer
BioPolymer.clone ( ) :  IBioPolymer
BioPolymer.clone ( ) :  IMolecule
BioPolymer.clone ( ) :  IPolymer
package org.openscience.cdk.silent
BioPolymer.clone ( ) :  IAtomContainer
BioPolymer.clone ( ) :  IBioPolymer
BioPolymer.clone ( ) :  IMolecule
BioPolymer.clone ( ) :  IPolymer

cdk-1.4.15.jar, BoundsColor.class
package org.openscience.cdk.renderer.generators
BoundsGenerator.BoundsColor.BoundsGenerator.BoundsColor ( )
BoundsGenerator.BoundsColor.getDefault ( ) :  Color
BoundsGenerator.BoundsColor.getDefault ( ) :  Object

cdk-1.4.15.jar, BoundsGenerator.class
package org.openscience.cdk.renderer.generators
BoundsGenerator.BoundsGenerator ( )
BoundsGenerator.generate ( IChemObject x0, RendererModel x1 ) :  IRenderingElement
BoundsGenerator.generate ( IReaction reaction, RendererModel model ) :  IRenderingElement
BoundsGenerator.getParameters ( ) :  List

cdk-1.4.15.jar, ChemModel.class
package org.openscience.cdk
ChemModel.isEmpty ( ) :  boolean
package org.openscience.cdk.silent
ChemModel.isEmpty ( ) :  boolean

cdk-1.4.15.jar, ChemModelRenderer.class
package org.openscience.cdk.renderer
ChemModelRenderer.calculateDiagramBounds ( IChemModel model ) :  Rectangle
ChemModelRenderer.calculateDiagramBounds ( IChemObject x0 ) :  Rectangle
ChemModelRenderer.calculateScaleForBondLength ( double modelBondLength ) :  double
ChemModelRenderer.ChemModelRenderer ( List generators, IFontManager fontManager )
ChemModelRenderer.ChemModelRenderer ( List generators, List reactionGenerators, IFontManager fontManager )
ChemModelRenderer.getGenerators ( ) :  List
ChemModelRenderer.paint ( IChemModel chemModel, IDrawVisitor drawVisitor ) :  Rectangle
ChemModelRenderer.paint ( IChemModel chemModel, IDrawVisitor drawVisitor, Rectangle2D bounds, boolean resetCenter ) :  void
ChemModelRenderer.paint ( IChemObject x0, IDrawVisitor x1 ) :  Rectangle
ChemModelRenderer.paint ( IChemObject x0, IDrawVisitor x1, Rectangle2D x2, boolean x3 ) :  void
ChemModelRenderer.repaint ( IDrawVisitor drawVisitor ) :  void
ChemModelRenderer.setScale ( IChemModel chemModel ) :  void
ChemModelRenderer.setScale ( IChemObject x0 ) :  void
ChemModelRenderer.setup ( IChemModel chemModel, Rectangle screen ) :  void
ChemModelRenderer.setup ( IChemObject x0, Rectangle x1 ) :  void

cdk-1.4.15.jar, ColorByType.class
package org.openscience.cdk.renderer.generators
AtomNumberGenerator.ColorByType.AtomNumberGenerator.ColorByType ( )
AtomNumberGenerator.ColorByType.getDefault ( ) :  Boolean
AtomNumberGenerator.ColorByType.getDefault ( ) :  Object

cdk-1.4.15.jar, Conformation.class
package org.openscience.cdk.interfaces
IDoubleBondStereochemistry.Conformation.valueOf ( String name ) [static] :  IDoubleBondStereochemistry.Conformation
IDoubleBondStereochemistry.Conformation.values ( ) [static] :  IDoubleBondStereochemistry.Conformation[ ]

cdk-1.4.15.jar, Crystal.class
package org.openscience.cdk
Crystal.clone ( ) :  IAtomContainer
Crystal.clone ( ) :  ICrystal
package org.openscience.cdk.silent
Crystal.clone ( ) :  IAtomContainer
Crystal.clone ( ) :  ICrystal

cdk-1.4.15.jar, DebugAminoAcid.class
package org.openscience.cdk.debug
DebugAminoAcid.clone ( ) :  IAminoAcid
DebugAminoAcid.clone ( ) :  IAtomContainer
DebugAminoAcid.clone ( ) :  IMonomer

cdk-1.4.15.jar, DebugAtomContainer.class
package org.openscience.cdk.debug
DebugAtomContainer.clone ( ) :  IAtomContainer
DebugAtomContainer.isEmpty ( ) :  boolean
DebugAtomContainer.setStereoElements ( List elements ) :  void

cdk-1.4.15.jar, DebugAtomContainerSet.class
package org.openscience.cdk.debug
DebugAtomContainerSet.isEmpty ( ) :  boolean

cdk-1.4.15.jar, DebugAtomParity.class
package org.openscience.cdk.debug
DebugAtomParity.map ( Map atoms, Map bonds ) :  IAtomParity
DebugAtomParity.map ( Map x0, Map x1 ) :  IStereoElement

cdk-1.4.15.jar, DebugBioPolymer.class
package org.openscience.cdk.debug
DebugBioPolymer.clone ( ) :  IAtomContainer
DebugBioPolymer.clone ( ) :  IBioPolymer
DebugBioPolymer.clone ( ) :  IMolecule
DebugBioPolymer.clone ( ) :  IPolymer

cdk-1.4.15.jar, DebugChemModel.class
package org.openscience.cdk.debug
DebugChemModel.isEmpty ( ) :  boolean

cdk-1.4.15.jar, DebugCrystal.class
package org.openscience.cdk.debug
DebugCrystal.clone ( ) :  IAtomContainer
DebugCrystal.clone ( ) :  ICrystal
DebugCrystal.isEmpty ( ) :  boolean

cdk-1.4.15.jar, DebugMolecule.class
package org.openscience.cdk.debug
DebugMolecule.clone ( ) :  IAtomContainer
DebugMolecule.clone ( ) :  IMolecule

cdk-1.4.15.jar, DebugMonomer.class
package org.openscience.cdk.debug
DebugMonomer.clone ( ) :  IAtomContainer
DebugMonomer.clone ( ) :  IMonomer

cdk-1.4.15.jar, DebugPolymer.class
package org.openscience.cdk.debug
DebugPolymer.clone ( ) :  IAtomContainer
DebugPolymer.clone ( ) :  IMolecule
DebugPolymer.clone ( ) :  IPolymer

cdk-1.4.15.jar, DebugReactionSet.class
package org.openscience.cdk.debug
DebugReactionSet.isEmpty ( ) :  boolean

cdk-1.4.15.jar, DebugRing.class
package org.openscience.cdk.debug
DebugRing.clone ( ) :  IAtomContainer
DebugRing.clone ( ) :  IRing

cdk-1.4.15.jar, DebugStrand.class
package org.openscience.cdk.debug
DebugStrand.clone ( ) :  IAtomContainer
DebugStrand.clone ( ) :  IStrand

cdk-1.4.15.jar, DoubleBondAcceptingAromaticityDetector.class
package org.openscience.cdk.aromaticity
DoubleBondAcceptingAromaticityDetector.detectAromaticity ( IAtomContainer atomContainer ) [static] :  boolean
DoubleBondAcceptingAromaticityDetector.DoubleBondAcceptingAromaticityDetector ( )

cdk-1.4.15.jar, DoubleBondStereochemistry.class
package org.openscience.cdk.stereo
DoubleBondStereochemistry.DoubleBondStereochemistry ( IBond stereoBond, IBond[ ] ligandBonds, IDoubleBondStereochemistry.Conformation stereo )
DoubleBondStereochemistry.getBonds ( ) :  IBond[ ]
DoubleBondStereochemistry.getBuilder ( ) :  IChemObjectBuilder
DoubleBondStereochemistry.getStereo ( ) :  IDoubleBondStereochemistry.Conformation
DoubleBondStereochemistry.getStereoBond ( ) :  IBond
DoubleBondStereochemistry.map ( Map atoms, Map bonds ) :  IDoubleBondStereochemistry
DoubleBondStereochemistry.map ( Map x0, Map x1 ) :  IStereoElement
DoubleBondStereochemistry.setBuilder ( IChemObjectBuilder builder ) :  void

cdk-1.4.15.jar, ExtendedAtomGenerator.class
package org.openscience.cdk.renderer.generators
ExtendedAtomGenerator.ExtendedAtomGenerator ( )
ExtendedAtomGenerator.generate ( IAtomContainer container, IAtom atom, RendererModel model ) :  IRenderingElement
ExtendedAtomGenerator.getParameters ( ) :  List

cdk-1.4.15.jar, IAminoAcid.class
package org.openscience.cdk.interfaces
IAminoAcid.clone ( ) [abstract] :  IAminoAcid

cdk-1.4.15.jar, IAtomContainer.class
package org.openscience.cdk.interfaces
IAtomContainer.clone ( ) [abstract] :  IAtomContainer
IAtomContainer.isEmpty ( ) [abstract] :  boolean
IAtomContainer.setStereoElements ( List p1 ) [abstract] :  void

cdk-1.4.15.jar, IAtomContainerSet.class
package org.openscience.cdk.interfaces
IAtomContainerSet.isEmpty ( ) [abstract] :  boolean

cdk-1.4.15.jar, IAtomParity.class
package org.openscience.cdk.interfaces
IAtomParity.map ( Map p1, Map p2 ) [abstract] :  IAtomParity

cdk-1.4.15.jar, IBioPolymer.class
package org.openscience.cdk.interfaces
IBioPolymer.clone ( ) [abstract] :  IBioPolymer

cdk-1.4.15.jar, IChemModel.class
package org.openscience.cdk.interfaces
IChemModel.isEmpty ( ) [abstract] :  boolean

cdk-1.4.15.jar, ICrystal.class
package org.openscience.cdk.interfaces
ICrystal.clone ( ) [abstract] :  ICrystal

cdk-1.4.15.jar, IDoubleBondStereochemistry.class
package org.openscience.cdk.interfaces
IDoubleBondStereochemistry.getBonds ( ) [abstract] :  IBond[ ]
IDoubleBondStereochemistry.getStereo ( ) [abstract] :  IDoubleBondStereochemistry.Conformation
IDoubleBondStereochemistry.getStereoBond ( ) [abstract] :  IBond
IDoubleBondStereochemistry.map ( Map p1, Map p2 ) [abstract] :  IDoubleBondStereochemistry

cdk-1.4.15.jar, IMolecule.class
package org.openscience.cdk.interfaces
IMolecule.clone ( ) [abstract] :  IMolecule

cdk-1.4.15.jar, IMonomer.class
package org.openscience.cdk.interfaces
IMonomer.clone ( ) [abstract] :  IMonomer

cdk-1.4.15.jar, IPDBMonomer.class
package org.openscience.cdk.interfaces
IPDBMonomer.clone ( ) [abstract] :  IPDBMonomer

cdk-1.4.15.jar, IPDBPolymer.class
package org.openscience.cdk.interfaces
IPDBPolymer.clone ( ) [abstract] :  IPDBPolymer

cdk-1.4.15.jar, IPolymer.class
package org.openscience.cdk.interfaces
IPolymer.clone ( ) [abstract] :  IPolymer

cdk-1.4.15.jar, IReactionSet.class
package org.openscience.cdk.interfaces
IReactionSet.isEmpty ( ) [abstract] :  boolean

cdk-1.4.15.jar, IRing.class
package org.openscience.cdk.interfaces
IRing.clone ( ) [abstract] :  IRing

cdk-1.4.15.jar, IRingSet.class
package org.openscience.cdk.interfaces
IRingSet.isEmpty ( ) [abstract] :  boolean

cdk-1.4.15.jar, IStereoElement.class
package org.openscience.cdk.interfaces
IStereoElement.map ( Map p1, Map p2 ) [abstract] :  IStereoElement

cdk-1.4.15.jar, IStrand.class
package org.openscience.cdk.interfaces
IStrand.clone ( ) [abstract] :  IStrand

cdk-1.4.15.jar, ITetrahedralChirality.class
package org.openscience.cdk.interfaces
ITetrahedralChirality.map ( Map p1, Map p2 ) [abstract] :  ITetrahedralChirality

cdk-1.4.15.jar, LonePairGenerator.class
package org.openscience.cdk.renderer.generators
LonePairGenerator.generate ( IAtomContainer container, RendererModel model ) :  IRenderingElement
LonePairGenerator.generate ( IChemObject x0, RendererModel x1 ) :  IRenderingElement
LonePairGenerator.getParameters ( ) :  List
LonePairGenerator.LonePairGenerator ( )

cdk-1.4.15.jar, MappingGenerator.class
package org.openscience.cdk.renderer.generators
MappingGenerator.generate ( IChemObject x0, RendererModel x1 ) :  IRenderingElement
MappingGenerator.generate ( IReaction reaction, RendererModel model ) :  IRenderingElement
MappingGenerator.getParameters ( ) :  List
MappingGenerator.MappingGenerator ( )

cdk-1.4.15.jar, MappingLineWidth.class
package org.openscience.cdk.renderer.generators
MappingGenerator.MappingLineWidth.getDefault ( ) :  Double
MappingGenerator.MappingLineWidth.getDefault ( ) :  Object
MappingGenerator.MappingLineWidth.MappingGenerator.MappingLineWidth ( )

cdk-1.4.15.jar, Molecule.class
package org.openscience.cdk
Molecule.clone ( ) :  IAtomContainer
Molecule.clone ( ) :  IMolecule
package org.openscience.cdk.silent
Molecule.clone ( ) :  IAtomContainer
Molecule.clone ( ) :  IMolecule

cdk-1.4.15.jar, MoleculeSetRenderer.class
package org.openscience.cdk.renderer
MoleculeSetRenderer.calculateDiagramBounds ( IChemObject x0 ) :  Rectangle
MoleculeSetRenderer.calculateDiagramBounds ( IMoleculeSet moleculeSet ) :  Rectangle
MoleculeSetRenderer.calculateScaleForBondLength ( double modelBondLength ) :  double
MoleculeSetRenderer.generateDiagram ( IChemObject x0 ) :  IRenderingElement
MoleculeSetRenderer.generateDiagram ( IMoleculeSet molecules ) :  IRenderingElement
MoleculeSetRenderer.getGenerators ( ) :  List
MoleculeSetRenderer.MoleculeSetRenderer ( List generators, IFontManager fontManager )
MoleculeSetRenderer.MoleculeSetRenderer ( RendererModel rendererModel, List generators, IFontManager fontManager )
MoleculeSetRenderer.paint ( IChemObject x0, IDrawVisitor x1 ) :  Rectangle
MoleculeSetRenderer.paint ( IChemObject x0, IDrawVisitor x1, Rectangle2D x2, boolean x3 ) :  void
MoleculeSetRenderer.paint ( IMoleculeSet molecules, IDrawVisitor drawVisitor, Rectangle2D bounds, boolean resetCenter ) :  void
MoleculeSetRenderer.paint ( IMoleculeSet moleculeSet, IDrawVisitor drawVisitor ) :  Rectangle
MoleculeSetRenderer.setScale ( IChemObject x0 ) :  void
MoleculeSetRenderer.setScale ( IMoleculeSet moleculeSet ) :  void
MoleculeSetRenderer.setup ( IChemObject x0, Rectangle x1 ) :  void
MoleculeSetRenderer.setup ( IMoleculeSet moleculeSet, Rectangle screen ) :  void
MoleculeSetRenderer.shift ( Rectangle screenBounds, Rectangle diagramBounds ) :  Rectangle

cdk-1.4.15.jar, Monomer.class
package org.openscience.cdk
Monomer.clone ( ) :  IAtomContainer
Monomer.clone ( ) :  IMonomer
Monomer.clone ( ) :  Object
package org.openscience.cdk.silent
Monomer.clone ( ) :  IAtomContainer
Monomer.clone ( ) :  IMonomer
Monomer.clone ( ) :  Object

cdk-1.4.15.jar, NNAtomParity.class
package org.openscience.cdk.nonotify
NNAtomParity.map ( Map atoms, Map bonds ) :  IAtomParity
NNAtomParity.map ( Map x0, Map x1 ) :  IStereoElement

cdk-1.4.15.jar, Offset.class
package org.openscience.cdk.renderer.generators
AtomNumberGenerator.Offset.AtomNumberGenerator.Offset ( )
AtomNumberGenerator.Offset.getDefault ( ) :  Object
AtomNumberGenerator.Offset.getDefault ( ) :  Vector2d

cdk-1.4.15.jar, PDBMonomer.class
package org.openscience.cdk.protein.data
PDBMonomer.clone ( ) :  IAtomContainer
PDBMonomer.clone ( ) :  IMonomer
PDBMonomer.clone ( ) :  IPDBMonomer
PDBMonomer.clone ( ) :  Object
package org.openscience.cdk.silent
PDBMonomer.clone ( ) :  IAtomContainer
PDBMonomer.clone ( ) :  IMonomer
PDBMonomer.clone ( ) :  IPDBMonomer
PDBMonomer.clone ( ) :  Object

cdk-1.4.15.jar, PDBPolymer.class
package org.openscience.cdk.protein.data
PDBPolymer.clone ( ) :  IAtomContainer
PDBPolymer.clone ( ) :  IBioPolymer
PDBPolymer.clone ( ) :  IMolecule
PDBPolymer.clone ( ) :  IPDBPolymer
PDBPolymer.clone ( ) :  IPolymer
PDBPolymer.clone ( ) :  Object
package org.openscience.cdk.silent
PDBPolymer.clone ( ) :  IAtomContainer
PDBPolymer.clone ( ) :  IBioPolymer
PDBPolymer.clone ( ) :  IMolecule
PDBPolymer.clone ( ) :  IPDBPolymer
PDBPolymer.clone ( ) :  IPolymer
PDBPolymer.clone ( ) :  Object

cdk-1.4.15.jar, Polymer.class
package org.openscience.cdk
Polymer.clone ( ) :  IAtomContainer
Polymer.clone ( ) :  IMolecule
Polymer.clone ( ) :  IPolymer
package org.openscience.cdk.silent
Polymer.clone ( ) :  IAtomContainer
Polymer.clone ( ) :  IMolecule
Polymer.clone ( ) :  IPolymer

cdk-1.4.15.jar, ProductsBoxGenerator.class
package org.openscience.cdk.renderer.generators
ProductsBoxGenerator.generate ( IChemObject x0, RendererModel x1 ) :  IRenderingElement
ProductsBoxGenerator.generate ( IReaction reaction, RendererModel model ) :  IRenderingElement
ProductsBoxGenerator.getParameters ( ) :  List
ProductsBoxGenerator.ProductsBoxGenerator ( )

cdk-1.4.15.jar, RadicalGenerator.class
package org.openscience.cdk.renderer.generators
RadicalGenerator.generate ( IAtomContainer container, RendererModel model ) :  IRenderingElement
RadicalGenerator.generate ( IChemObject x0, RendererModel x1 ) :  IRenderingElement
RadicalGenerator.getParameters ( ) :  List
RadicalGenerator.RadicalGenerator ( )

cdk-1.4.15.jar, ReactantsBoxGenerator.class
package org.openscience.cdk.renderer.generators
ReactantsBoxGenerator.generate ( IChemObject x0, RendererModel x1 ) :  IRenderingElement
ReactantsBoxGenerator.generate ( IReaction reaction, RendererModel model ) :  IRenderingElement
ReactantsBoxGenerator.getParameters ( ) :  List
ReactantsBoxGenerator.ReactantsBoxGenerator ( )

cdk-1.4.15.jar, ReactionArrowGenerator.class
package org.openscience.cdk.renderer.generators
ReactionArrowGenerator.generate ( IChemObject x0, RendererModel x1 ) :  IRenderingElement
ReactionArrowGenerator.generate ( IReaction reaction, RendererModel model ) :  IRenderingElement
ReactionArrowGenerator.getParameters ( ) :  List
ReactionArrowGenerator.ReactionArrowGenerator ( )

cdk-1.4.15.jar, ReactionBoxGenerator.class
package org.openscience.cdk.renderer.generators
ReactionBoxGenerator.generate ( IChemObject x0, RendererModel x1 ) :  IRenderingElement
ReactionBoxGenerator.generate ( IReaction reaction, RendererModel model ) :  IRenderingElement
ReactionBoxGenerator.getParameters ( ) :  List
ReactionBoxGenerator.ReactionBoxGenerator ( )

cdk-1.4.15.jar, ReactionPlusGenerator.class
package org.openscience.cdk.renderer.generators
ReactionPlusGenerator.generate ( IChemObject x0, RendererModel x1 ) :  IRenderingElement
ReactionPlusGenerator.generate ( IReaction reaction, RendererModel model ) :  IRenderingElement
ReactionPlusGenerator.getParameters ( ) :  List
ReactionPlusGenerator.ReactionPlusGenerator ( )

cdk-1.4.15.jar, ReactionRenderer.class
package org.openscience.cdk.renderer
ReactionRenderer.calculateDiagramBounds ( IChemObject x0 ) :  Rectangle
ReactionRenderer.calculateDiagramBounds ( IReaction reaction ) :  Rectangle
ReactionRenderer.calculateScaleForBondLength ( double modelBondLength ) :  double
ReactionRenderer.generateDiagram ( IChemObject x0 ) :  IRenderingElement
ReactionRenderer.generateDiagram ( IReaction reaction ) :  IRenderingElement
ReactionRenderer.getGenerators ( ) :  List
ReactionRenderer.paint ( IChemObject x0, IDrawVisitor x1 ) :  Rectangle
ReactionRenderer.paint ( IChemObject x0, IDrawVisitor x1, Rectangle2D x2, boolean x3 ) :  void
ReactionRenderer.paint ( IReaction reaction, IDrawVisitor drawVisitor ) :  Rectangle
ReactionRenderer.paint ( IReaction reaction, IDrawVisitor drawVisitor, Rectangle2D bounds, boolean resetCenter ) :  void
ReactionRenderer.ReactionRenderer ( List generators, IFontManager fontManager )
ReactionRenderer.ReactionRenderer ( List generators, List reactionGenerators, IFontManager fontManager )
ReactionRenderer.ReactionRenderer ( RendererModel rendererModel, List generators, IFontManager fontManager )
ReactionRenderer.setScale ( IChemObject x0 ) :  void
ReactionRenderer.setScale ( IReaction reaction ) :  void
ReactionRenderer.setup ( IChemObject x0, Rectangle x1 ) :  void
ReactionRenderer.setup ( IReaction reaction, Rectangle screen ) :  void

cdk-1.4.15.jar, ReactionSceneGenerator.class
package org.openscience.cdk.renderer.generators
ReactionSceneGenerator.generate ( IChemObject x0, RendererModel x1 ) :  IRenderingElement
ReactionSceneGenerator.generate ( IReaction reaction, RendererModel model ) :  IRenderingElement
ReactionSceneGenerator.getParameters ( ) :  List
ReactionSceneGenerator.ReactionSceneGenerator ( )

cdk-1.4.15.jar, ReactionSet.class
package org.openscience.cdk
ReactionSet.isEmpty ( ) :  boolean
package org.openscience.cdk.silent
ReactionSet.isEmpty ( ) :  boolean

cdk-1.4.15.jar, ReactionSetRenderer.class
package org.openscience.cdk.renderer
ReactionSetRenderer.calculateDiagramBounds ( IChemObject x0 ) :  Rectangle
ReactionSetRenderer.calculateDiagramBounds ( IReactionSet reactionSet ) :  Rectangle
ReactionSetRenderer.calculateScaleForBondLength ( double modelBondLength ) :  double
ReactionSetRenderer.getGenerators ( ) :  List
ReactionSetRenderer.paint ( IChemObject x0, IDrawVisitor x1 ) :  Rectangle
ReactionSetRenderer.paint ( IChemObject x0, IDrawVisitor x1, Rectangle2D x2, boolean x3 ) :  void
ReactionSetRenderer.paint ( IReactionSet reactionSet, IDrawVisitor drawVisitor ) :  Rectangle
ReactionSetRenderer.paint ( IReactionSet reactionSet, IDrawVisitor drawVisitor, Rectangle2D bounds, boolean resetCenter ) :  void
ReactionSetRenderer.ReactionSetRenderer ( List generators, IFontManager fontManager )
ReactionSetRenderer.ReactionSetRenderer ( List generators, List reactionGenerators, IFontManager fontManager )
ReactionSetRenderer.ReactionSetRenderer ( RendererModel rendererModel, List generators, IFontManager fontManager )
ReactionSetRenderer.ReactionSetRenderer ( RendererModel rendererModel, List generators, List reactionGenerators, IFontManager fontManager )
ReactionSetRenderer.setScale ( IChemObject x0 ) :  void
ReactionSetRenderer.setScale ( IReactionSet reactionSet ) :  void
ReactionSetRenderer.setup ( IChemObject x0, Rectangle x1 ) :  void
ReactionSetRenderer.setup ( IReactionSet reactionSet, Rectangle screen ) :  void

cdk-1.4.15.jar, Ring.class
package org.openscience.cdk
Ring.clone ( ) :  IAtomContainer
Ring.clone ( ) :  IRing
Ring.clone ( ) :  Object
package org.openscience.cdk.silent
Ring.clone ( ) :  IAtomContainer
Ring.clone ( ) :  IRing
Ring.clone ( ) :  Object

cdk-1.4.15.jar, ShowAtomAtomMapping.class
package org.openscience.cdk.renderer.generators
MappingGenerator.ShowAtomAtomMapping.getDefault ( ) :  Boolean
MappingGenerator.ShowAtomAtomMapping.getDefault ( ) :  Object
MappingGenerator.ShowAtomAtomMapping.MappingGenerator.ShowAtomAtomMapping ( )

cdk-1.4.15.jar, ShowAtomTypeNames.class
package org.openscience.cdk.renderer.generators
ExtendedAtomGenerator.ShowAtomTypeNames.ExtendedAtomGenerator.ShowAtomTypeNames ( )
ExtendedAtomGenerator.ShowAtomTypeNames.getDefault ( ) :  Boolean
ExtendedAtomGenerator.ShowAtomTypeNames.getDefault ( ) :  Object

cdk-1.4.15.jar, ShowImplicitHydrogens.class
package org.openscience.cdk.renderer.generators
ExtendedAtomGenerator.ShowImplicitHydrogens.ExtendedAtomGenerator.ShowImplicitHydrogens ( )
ExtendedAtomGenerator.ShowImplicitHydrogens.getDefault ( ) :  Boolean
ExtendedAtomGenerator.ShowImplicitHydrogens.getDefault ( ) :  Object

cdk-1.4.15.jar, ShowReactionBoxes.class
package org.openscience.cdk.renderer.generators
ReactionSceneGenerator.ShowReactionBoxes.getDefault ( ) :  Boolean
ReactionSceneGenerator.ShowReactionBoxes.getDefault ( ) :  Object
ReactionSceneGenerator.ShowReactionBoxes.ReactionSceneGenerator.ShowReactionBoxes ( )

cdk-1.4.15.jar, Strand.class
package org.openscience.cdk
Strand.clone ( ) :  IAtomContainer
Strand.clone ( ) :  IStrand
package org.openscience.cdk.silent
Strand.clone ( ) :  IAtomContainer
Strand.clone ( ) :  IStrand

cdk-1.4.15.jar, TetrahedralChirality.class
package org.openscience.cdk.stereo
TetrahedralChirality.map ( Map atoms, Map bonds ) :  ITetrahedralChirality
TetrahedralChirality.map ( Map x0, Map x1 ) :  IStereoElement
TetrahedralChirality.setBuilder ( IChemObjectBuilder builder ) :  void

cdk-1.4.15.jar, WillDrawAtomNumbers.class
package org.openscience.cdk.renderer.generators
AtomNumberGenerator.WillDrawAtomNumbers.AtomNumberGenerator.WillDrawAtomNumbers ( )
AtomNumberGenerator.WillDrawAtomNumbers.getDefault ( ) :  Boolean
AtomNumberGenerator.WillDrawAtomNumbers.getDefault ( ) :  Object

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Problems with Data Types, High Severity (20)

	Change	Effect
1	Abstract method clone ( ) has been added to this interface.	Recompilation of a client program may be terminated with the message: a client class C is not abstract and does not override abstract method clone() in IAminoAcid.

	Change	Effect
1	Abstract method clone ( ) has been added to this interface.	Recompilation of a client program may be terminated with the message: a client class C is not abstract and does not override abstract method clone() in IAtomContainer.
2	Abstract method isEmpty ( ) has been added to this interface.	Recompilation of a client program may be terminated with the message: a client class C is not abstract and does not override abstract method isEmpty() in IAtomContainer.
3	Abstract method setStereoElements ( List ) has been added to this interface.	Recompilation of a client program may be terminated with the message: a client class C is not abstract and does not override abstract method setStereoElements(List) in IAtomContainer.

	Change	Effect
1	Abstract method isEmpty ( ) has been added to this interface.	Recompilation of a client program may be terminated with the message: a client class C is not abstract and does not override abstract method isEmpty() in IAtomContainerSet.

	Change	Effect
1	Abstract method map ( Map, Map ) has been added to this interface.	Recompilation of a client program may be terminated with the message: a client class C is not abstract and does not override abstract method map(Map, Map) in IAtomParity.

	Change	Effect
1	Abstract method clone ( ) has been added to this interface.	Recompilation of a client program may be terminated with the message: a client class C is not abstract and does not override abstract method clone() in IBioPolymer.

	Change	Effect
1	Abstract method isEmpty ( ) has been added to this interface.	Recompilation of a client program may be terminated with the message: a client class C is not abstract and does not override abstract method isEmpty() in IChemModel.

	Change	Effect
1	Abstract method clone ( ) has been added to this interface.	Recompilation of a client program may be terminated with the message: a client class C is not abstract and does not override abstract method clone() in ICrystal.

	Change	Effect
1	Abstract method clone ( ) has been added to this interface.	Recompilation of a client program may be terminated with the message: a client class C is not abstract and does not override abstract method clone() in IMolecule.

	Change	Effect
1	Abstract method clone ( ) has been added to this interface.	Recompilation of a client program may be terminated with the message: a client class C is not abstract and does not override abstract method clone() in IMonomer.

	Change	Effect
1	Abstract method clone ( ) has been added to this interface.	Recompilation of a client program may be terminated with the message: a client class C is not abstract and does not override abstract method clone() in IPDBMonomer.

	Change	Effect
1	Abstract method clone ( ) has been added to this interface.	Recompilation of a client program may be terminated with the message: a client class C is not abstract and does not override abstract method clone() in IPDBPolymer.

	Change	Effect
1	Abstract method clone ( ) has been added to this interface.	Recompilation of a client program may be terminated with the message: a client class C is not abstract and does not override abstract method clone() in IPolymer.

	Change	Effect
1	Abstract method isEmpty ( ) has been added to this interface.	Recompilation of a client program may be terminated with the message: a client class C is not abstract and does not override abstract method isEmpty() in IReactionSet.

	Change	Effect
1	Abstract method clone ( ) has been added to this interface.	Recompilation of a client program may be terminated with the message: a client class C is not abstract and does not override abstract method clone() in IRing.

	Change	Effect
1	Abstract method isEmpty ( ) has been added to this interface.	Recompilation of a client program may be terminated with the message: a client class C is not abstract and does not override abstract method isEmpty() in IRingSet.

	Change	Effect
1	Abstract method map ( Map, Map ) has been added to this interface.	Recompilation of a client program may be terminated with the message: a client class C is not abstract and does not override abstract method map(Map, Map) in IStereoElement.

	Change	Effect
1	Abstract method clone ( ) has been added to this interface.	Recompilation of a client program may be terminated with the message: a client class C is not abstract and does not override abstract method clone() in IStrand.

	Change	Effect
1	Abstract method map ( Map, Map ) has been added to this interface.	Recompilation of a client program may be terminated with the message: a client class C is not abstract and does not override abstract method map(Map, Map) in ITetrahedralChirality.

cdk-1.4.14.jar
package org.openscience.cdk.interfaces
[+] IAminoAcid (1)
[+] IAtomContainer (3)
[+] IAtomContainerSet (1)
[+] IAtomParity (1)
[+] IBioPolymer (1)
[+] IChemModel (1)
[+] ICrystal (1)
[+] IMolecule (1)
[+] IMonomer (1)
[+] IPDBMonomer (1)
[+] IPDBPolymer (1)
[+] IPolymer (1)
[+] IReactionSet (1)
[+] IRing (1)
[+] IRingSet (1)
[+] IStereoElement (1)
[+] IStrand (1)
[+] ITetrahedralChirality (1)

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Other Changes in Data Types (1)

	Change	Effect
1	Field ATOMPAIR has been added to this class.	No effect. NOTE: A static field from a super-interface of a client class may hide an added field (with the same name) inherited from the super-class of a client class. Recompilation of a client class may be terminated with the message: reference to ATOMPAIR is ambiguous.

cdk-1.4.14.jar
package org.openscience.cdk.qsar
[+] DescriptorEngine (1)

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Java ARchives (1)

cdk-1.4.14.jar

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